Cluster: HRGMv2_1571_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1571
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1571_3 | HRGMv2_1571_3_43 | 64018 | 65445 | + | 4.A.1.2.11 |
| CAZyme | HRGMv2_1571_3 | HRGMv2_1571_3_44 | 65653 | 66966 | + | GH140 |
| TF | HRGMv2_1571_3 | HRGMv2_1571_3_45 | 67117 | 67971 | - | HTH_6 |
| CAZyme | HRGMv2_1571_3 | HRGMv2_1571_3_46 | 68245 | 70857 | - | GH106 |
| TF | HRGMv2_1571_3 | HRGMv2_1571_3_47 | 70972 | 71952 | + | HTH_AraC |
| CAZyme | HRGMv2_1571_3 | HRGMv2_1571_3_48 | 72220 | 73659 | + | GH1 |
| TC | HRGMv2_1571_3 | HRGMv2_1571_3_49 | 73800 | 74336 | + | 4.A.1.2.6 |
Gene ID: HRGMv2_1571_3_43
Type: TC
Location: 64018 - 65445 (+)
Type: TC
Location: 64018 - 65445 (+)
Gene ID: HRGMv2_1571_3_44
Type: CAZyme
Location: 65653 - 66966 (+)
Type: CAZyme
Location: 65653 - 66966 (+)
Gene ID: HRGMv2_1571_3_45
Type: TF
Location: 67117 - 67971 (-)
Type: TF
Location: 67117 - 67971 (-)
Gene ID: HRGMv2_1571_3_46
Type: CAZyme
Location: 68245 - 70857 (-)
Type: CAZyme
Location: 68245 - 70857 (-)
Gene ID: HRGMv2_1571_3_47
Type: TF
Location: 70972 - 71952 (+)
Type: TF
Location: 70972 - 71952 (+)
Gene ID: HRGMv2_1571_3_48
Type: CAZyme
Location: 72220 - 73659 (+)
Type: CAZyme
Location: 72220 - 73659 (+)
Gene ID: HRGMv2_1571_3_49
Type: TC
Location: 73800 - 74336 (+)
Type: TC
Location: 73800 - 74336 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.