Cluster: HRGMv2_1571_CGC5
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1571
- CGC Family ID: CGCFAM_03507
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1571_3 | HRGMv2_1571_3_37 | 52562 | 53992 | + | GH1 |
| TF | HRGMv2_1571_3 | HRGMv2_1571_3_38 | 54527 | 56071 | + | GerE |
| TC | HRGMv2_1571_3 | HRGMv2_1571_3_39 | 56171 | 58939 | - | 3.A.3.4.1 |
Gene ID: HRGMv2_1571_3_37
Type: CAZyme
Location: 52562 - 53992 (+)
Type: CAZyme
Location: 52562 - 53992 (+)
Gene ID: HRGMv2_1571_3_38
Type: TF
Location: 54527 - 56071 (+)
Type: TF
Location: 54527 - 56071 (+)
Gene ID: HRGMv2_1571_3_39
Type: TC
Location: 56171 - 58939 (-)
Type: TC
Location: 56171 - 58939 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.