Cluster: HRGMv2_1571_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1571
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1571_3 | HRGMv2_1571_3_24 | 34711 | 36117 | + | CE4 |
| STP | HRGMv2_1571_3 | HRGMv2_1571_3_25 | 36438 | 38282 | + | CBS | CBS |
| TC | HRGMv2_1571_3 | HRGMv2_1571_3_26 | 38291 | 39553 | + | 2.A.55.3.6 |
| TC | HRGMv2_1571_3 | HRGMv2_1571_3_27 | 40101 | 42317 | - | 9.B.97.5.1 |
Gene ID: HRGMv2_1571_3_24
Type: CAZyme
Location: 34711 - 36117 (+)
Type: CAZyme
Location: 34711 - 36117 (+)
Gene ID: HRGMv2_1571_3_25
Type: STP
Location: 36438 - 38282 (+)
Type: STP
Location: 36438 - 38282 (+)
Gene ID: HRGMv2_1571_3_26
Type: TC
Location: 38291 - 39553 (+)
Type: TC
Location: 38291 - 39553 (+)
Gene ID: HRGMv2_1571_3_27
Type: TC
Location: 40101 - 42317 (-)
Type: TC
Location: 40101 - 42317 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.