Cluster: HRGMv2_1571_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1571
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1571_28 | HRGMv2_1571_28_1 | 127 | 639 | + | 4.A.1.2.5 |
| pfam | HRGMv2_1571_28 | HRGMv2_1571_28_2 | 646 | 1512 | + | PRD | PRD | CAT_RBD |
| TC | HRGMv2_1571_28 | HRGMv2_1571_28_3 | 1612 | 3228 | + | 4.A.1.1.3 |
| CAZyme | HRGMv2_1571_28 | HRGMv2_1571_28_4 | 3232 | 4614 | + | GH4 |
Gene ID: HRGMv2_1571_28_1
Type: TC
Location: 127 - 639 (+)
Type: TC
Location: 127 - 639 (+)
Gene ID: HRGMv2_1571_28_2
Type: pfam
Location: 646 - 1512 (+)
Type: pfam
Location: 646 - 1512 (+)
Gene ID: HRGMv2_1571_28_3
Type: TC
Location: 1612 - 3228 (+)
Type: TC
Location: 1612 - 3228 (+)
Gene ID: HRGMv2_1571_28_4
Type: CAZyme
Location: 3232 - 4614 (+)
Type: CAZyme
Location: 3232 - 4614 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.