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Cluster: HRGMv2_1571_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1571_20 HRGMv2_1571_20_11 14720 17188 - 4.A.1.1.8
TF HRGMv2_1571_20 HRGMv2_1571_20_12 17398 18117 + GntR
TC HRGMv2_1571_20 HRGMv2_1571_20_13 18424 19740 + 3.A.1.1.45
TC HRGMv2_1571_20 HRGMv2_1571_20_14 19828 20682 + 3.A.1.1.45
TC HRGMv2_1571_20 HRGMv2_1571_20_15 20682 21521 + 3.A.1.1.45
TC HRGMv2_1571_20 HRGMv2_1571_20_16 21590 22789 + 3.A.1.1.22
CAZyme HRGMv2_1571_20 HRGMv2_1571_20_17 23245 25512 - GT35
CAZyme HRGMv2_1571_20 HRGMv2_1571_20_18 25641 27146 - GH77
Gene ID: HRGMv2_1571_20_11
Type: TC
Location: 14720 - 17188 (-)
Gene ID: HRGMv2_1571_20_12
Type: TF
Location: 17398 - 18117 (+)
Gene ID: HRGMv2_1571_20_13
Type: TC
Location: 18424 - 19740 (+)
Gene ID: HRGMv2_1571_20_14
Type: TC
Location: 19828 - 20682 (+)
Gene ID: HRGMv2_1571_20_15
Type: TC
Location: 20682 - 21521 (+)
Gene ID: HRGMv2_1571_20_16
Type: TC
Location: 21590 - 22789 (+)
Gene ID: HRGMv2_1571_20_17
Type: CAZyme
Location: 23245 - 25512 (-)
Gene ID: HRGMv2_1571_20_18
Type: CAZyme
Location: 25641 - 27146 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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