Cluster: HRGMv2_1571_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1571
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1571_1 | HRGMv2_1571_1_101 | 114214 | 115338 | - | GH172 |
| pfam | HRGMv2_1571_1 | HRGMv2_1571_1_102 | 115351 | 115749 | - | EIIA-man |
| TC | HRGMv2_1571_1 | HRGMv2_1571_1_103 | 115776 | 116609 | - | 4.A.6.1.13 |
| TC | HRGMv2_1571_1 | HRGMv2_1571_1_104 | 116612 | 117397 | - | 4.A.6.1.13 |
| TC | HRGMv2_1571_1 | HRGMv2_1571_1_105 | 117407 | 117880 | - | 4.A.6.1.18 |
Gene ID: HRGMv2_1571_1_101
Type: CAZyme
Location: 114214 - 115338 (-)
Type: CAZyme
Location: 114214 - 115338 (-)
Gene ID: HRGMv2_1571_1_102
Type: pfam
Location: 115351 - 115749 (-)
Type: pfam
Location: 115351 - 115749 (-)
Gene ID: HRGMv2_1571_1_103
Type: TC
Location: 115776 - 116609 (-)
Type: TC
Location: 115776 - 116609 (-)
Gene ID: HRGMv2_1571_1_104
Type: TC
Location: 116612 - 117397 (-)
Type: TC
Location: 116612 - 117397 (-)
Gene ID: HRGMv2_1571_1_105
Type: TC
Location: 117407 - 117880 (-)
Type: TC
Location: 117407 - 117880 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.