Cluster: HRGMv2_1571_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1571
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1571_16 | HRGMv2_1571_16_1 | 154 | 1596 | - | GH1 |
| TF | HRGMv2_1571_16 | HRGMv2_1571_16_2 | 1938 | 2975 | + | LacI |
| CAZyme | HRGMv2_1571_16 | HRGMv2_1571_16_3 | 3252 | 4691 | - | GH1 |
| TC | HRGMv2_1571_16 | HRGMv2_1571_16_4 | 4758 | 6533 | - | 4.A.3.1.1 |
| TF | HRGMv2_1571_16 | HRGMv2_1571_16_5 | 6890 | 7894 | + | LacI |
| TC | HRGMv2_1571_16 | HRGMv2_1571_16_6 | 8109 | 8447 | + | 4.A.3.1.2 |
Gene ID: HRGMv2_1571_16_1
Type: CAZyme
Location: 154 - 1596 (-)
Type: CAZyme
Location: 154 - 1596 (-)
Gene ID: HRGMv2_1571_16_2
Type: TF
Location: 1938 - 2975 (+)
Type: TF
Location: 1938 - 2975 (+)
Gene ID: HRGMv2_1571_16_3
Type: CAZyme
Location: 3252 - 4691 (-)
Type: CAZyme
Location: 3252 - 4691 (-)
Gene ID: HRGMv2_1571_16_4
Type: TC
Location: 4758 - 6533 (-)
Type: TC
Location: 4758 - 6533 (-)
Gene ID: HRGMv2_1571_16_5
Type: TF
Location: 6890 - 7894 (+)
Type: TF
Location: 6890 - 7894 (+)
Gene ID: HRGMv2_1571_16_6
Type: TC
Location: 8109 - 8447 (+)
Type: TC
Location: 8109 - 8447 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.