Cluster: HRGMv2_1571_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1571
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1571_15 | HRGMv2_1571_15_21 | 26499 | 28907 | - | 9.B.144.1.5 |
| CAZyme | HRGMv2_1571_15 | HRGMv2_1571_15_22 | 28891 | 29859 | - | GT2 |
| CAZyme | HRGMv2_1571_15 | HRGMv2_1571_15_23 | 29866 | 30837 | - | GT81 |
| TC | HRGMv2_1571_15 | HRGMv2_1571_15_24 | 30998 | 31843 | + | 3.A.1.103.6 |
| TC | HRGMv2_1571_15 | HRGMv2_1571_15_25 | 31855 | 32622 | + | 3.A.1.103.1 |
Gene ID: HRGMv2_1571_15_21
Type: TC
Location: 26499 - 28907 (-)
Type: TC
Location: 26499 - 28907 (-)
Gene ID: HRGMv2_1571_15_22
Type: CAZyme
Location: 28891 - 29859 (-)
Type: CAZyme
Location: 28891 - 29859 (-)
Gene ID: HRGMv2_1571_15_23
Type: CAZyme
Location: 29866 - 30837 (-)
Type: CAZyme
Location: 29866 - 30837 (-)
Gene ID: HRGMv2_1571_15_24
Type: TC
Location: 30998 - 31843 (+)
Type: TC
Location: 30998 - 31843 (+)
Gene ID: HRGMv2_1571_15_25
Type: TC
Location: 31855 - 32622 (+)
Type: TC
Location: 31855 - 32622 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1571_15_22 | vegetarian > omnivore | 1.05516 | 0.04957 |