Cluster: HRGMv2_1571_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1571
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1571_8 | HRGMv2_1571_8_59 | 61560 | 62675 | - | GT28 |
| TC | HRGMv2_1571_8 | HRGMv2_1571_8_60 | 62665 | 64158 | - | 2.A.103.1.1 |
| pfam | HRGMv2_1571_8 | HRGMv2_1571_8_61 | 64194 | 65600 | - | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_1571_8 | HRGMv2_1571_8_62 | 65610 | 66629 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_1571_8_59
Type: CAZyme
Location: 61560 - 62675 (-)
Type: CAZyme
Location: 61560 - 62675 (-)
Gene ID: HRGMv2_1571_8_60
Type: TC
Location: 62665 - 64158 (-)
Type: TC
Location: 62665 - 64158 (-)
Gene ID: HRGMv2_1571_8_61
Type: pfam
Location: 64194 - 65600 (-)
Type: pfam
Location: 64194 - 65600 (-)
Gene ID: HRGMv2_1571_8_62
Type: TC
Location: 65610 - 66629 (-)
Type: TC
Location: 65610 - 66629 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.