Cluster: HRGMv2_1571_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1571
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1571_6 | HRGMv2_1571_6_64 | 83061 | 84386 | + | GH4 |
| TC | HRGMv2_1571_6 | HRGMv2_1571_6_65 | 84469 | 86031 | + | 4.A.1.1.3 |
| TF | HRGMv2_1571_6 | HRGMv2_1571_6_66 | 86225 | 87025 | - | HTH_6 |
| TC | HRGMv2_1571_6 | HRGMv2_1571_6_67 | 87103 | 88683 | - | 4.A.1.1.14 |
| CAZyme | HRGMv2_1571_6 | HRGMv2_1571_6_68 | 88708 | 90033 | - | GH4 |
| TC | HRGMv2_1571_6 | HRGMv2_1571_6_69 | 90277 | 91506 | - | 2.A.1.2.25 |
Gene ID: HRGMv2_1571_6_64
Type: CAZyme
Location: 83061 - 84386 (+)
Type: CAZyme
Location: 83061 - 84386 (+)
Gene ID: HRGMv2_1571_6_65
Type: TC
Location: 84469 - 86031 (+)
Type: TC
Location: 84469 - 86031 (+)
Gene ID: HRGMv2_1571_6_66
Type: TF
Location: 86225 - 87025 (-)
Type: TF
Location: 86225 - 87025 (-)
Gene ID: HRGMv2_1571_6_67
Type: TC
Location: 87103 - 88683 (-)
Type: TC
Location: 87103 - 88683 (-)
Gene ID: HRGMv2_1571_6_68
Type: CAZyme
Location: 88708 - 90033 (-)
Type: CAZyme
Location: 88708 - 90033 (-)
Gene ID: HRGMv2_1571_6_69
Type: TC
Location: 90277 - 91506 (-)
Type: TC
Location: 90277 - 91506 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.