dbCAN HGM

Cluster: HRGMv2_1570_CGC4

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1570_3	HRGMv2_1570_3_121	84694	86163	-	4.A.1.2.6
CAZyme	HRGMv2_1570_3	HRGMv2_1570_3_122	86232	87563	-	GH4
TF	HRGMv2_1570_3	HRGMv2_1570_3_123	87773	88513	+	GntR
pfam	HRGMv2_1570_3	HRGMv2_1570_3_124	88622	90709	-	Gln-synt_C \| GSIII_N \| Gln-synt_C-ter
CAZyme	HRGMv2_1570_3	HRGMv2_1570_3_125	91143	92582	-	GH1
pfam	HRGMv2_1570_3	HRGMv2_1570_3_126	92575	92925	-	PTS_IIA
TC	HRGMv2_1570_3	HRGMv2_1570_3_127	93004	94263	-	4.A.3.2.2

Gene ID: HRGMv2_1570_3_121
Type: TC
Location: 84694 - 86163 (-)

Gene ID: HRGMv2_1570_3_122
Type: CAZyme
Location: 86232 - 87563 (-)

Gene ID: HRGMv2_1570_3_123
Type: TF
Location: 87773 - 88513 (+)

Gene ID: HRGMv2_1570_3_124
Type: pfam
Location: 88622 - 90709 (-)

Gene ID: HRGMv2_1570_3_125
Type: CAZyme
Location: 91143 - 92582 (-)

Gene ID: HRGMv2_1570_3_126
Type: pfam
Location: 92575 - 92925 (-)

Gene ID: HRGMv2_1570_3_127
Type: TC
Location: 93004 - 94263 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1570_3_121	vegan > omnivore	17.17618	0.01057
HRGMv2_1570_3_121	vegetarian > omnivore	16.51009	0.01332
HRGMv2_1570_3_122	vegan > omnivore	3.07593	0.01057
HRGMv2_1570_3_122	vegetarian > omnivore	2.46798	0.01831
HRGMv2_1570_3_123	vegan > omnivore	9.46982	0.01057
HRGMv2_1570_3_123	vegetarian > omnivore	8.82295	0.01831