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Cluster: HRGMv2_1570_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1570_29 HRGMv2_1570_29_5 4318 5823 + GH77
CAZyme HRGMv2_1570_29 HRGMv2_1570_29_6 5952 8219 + GT35
TC HRGMv2_1570_29 HRGMv2_1570_29_7 8676 9875 - 3.A.1.1.22
TC HRGMv2_1570_29 HRGMv2_1570_29_8 9944 10783 - 3.A.1.1.45
TC HRGMv2_1570_29 HRGMv2_1570_29_9 10783 11637 - 3.A.1.1.45
TC HRGMv2_1570_29 HRGMv2_1570_29_10 11725 13041 - 3.A.1.1.45
TF HRGMv2_1570_29 HRGMv2_1570_29_11 13348 14067 - GntR
NULL(UNKNOWN) HRGMv2_1570_29 HRGMv2_1570_29_12 14151 14270 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1570_29 HRGMv2_1570_29_13 14292 16742 + 4.A.1.1.8
Gene ID: HRGMv2_1570_29_5
Type: CAZyme
Location: 4318 - 5823 (+)
Gene ID: HRGMv2_1570_29_6
Type: CAZyme
Location: 5952 - 8219 (+)
Gene ID: HRGMv2_1570_29_7
Type: TC
Location: 8676 - 9875 (-)
Gene ID: HRGMv2_1570_29_8
Type: TC
Location: 9944 - 10783 (-)
Gene ID: HRGMv2_1570_29_9
Type: TC
Location: 10783 - 11637 (-)
Gene ID: HRGMv2_1570_29_10
Type: TC
Location: 11725 - 13041 (-)
Gene ID: HRGMv2_1570_29_11
Type: TF
Location: 13348 - 14067 (-)
Gene ID: HRGMv2_1570_29_12
Type:
Location: 14151 - 14270 (-)
Gene ID: HRGMv2_1570_29_13
Type: TC
Location: 14292 - 16742 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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