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Cluster: HRGMv2_1570_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1570_23 HRGMv2_1570_23_26 25714 26157 + 4.A.6.1.16
pfam HRGMv2_1570_23 HRGMv2_1570_23_27 26157 26438 + YajC
TC HRGMv2_1570_23 HRGMv2_1570_23_28 26475 26957 + 4.A.6.1.4
TC HRGMv2_1570_23 HRGMv2_1570_23_29 27048 27848 + 4.A.6.1.4
TC HRGMv2_1570_23 HRGMv2_1570_23_30 27838 28920 + 4.A.6.1.4
TF HRGMv2_1570_23 HRGMv2_1570_23_31 29105 29836 + GntR
STP HRGMv2_1570_23 HRGMv2_1570_23_32 29951 31117 + SIS | SIS
CAZyme HRGMv2_1570_23 HRGMv2_1570_23_33 31235 32404 + CE9
Gene ID: HRGMv2_1570_23_26
Type: TC
Location: 25714 - 26157 (+)
Gene ID: HRGMv2_1570_23_27
Type: pfam
Location: 26157 - 26438 (+)
Gene ID: HRGMv2_1570_23_28
Type: TC
Location: 26475 - 26957 (+)
Gene ID: HRGMv2_1570_23_29
Type: TC
Location: 27048 - 27848 (+)
Gene ID: HRGMv2_1570_23_30
Type: TC
Location: 27838 - 28920 (+)
Gene ID: HRGMv2_1570_23_31
Type: TF
Location: 29105 - 29836 (+)
Gene ID: HRGMv2_1570_23_32
Type: STP
Location: 29951 - 31117 (+)
Gene ID: HRGMv2_1570_23_33
Type: CAZyme
Location: 31235 - 32404 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1570_23_27 vegan > omnivore 1.09669 0.01057

🧭 Explore Read Mapping of CGC

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