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Cluster: HRGMv2_1569_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1569_6 HRGMv2_1569_6_22 20990 21526 - 4.A.1.2.6
CAZyme HRGMv2_1569_6 HRGMv2_1569_6_23 21667 23106 - GH1
TF HRGMv2_1569_6 HRGMv2_1569_6_24 23277 24269 - 0035607
CAZyme HRGMv2_1569_6 HRGMv2_1569_6_25 24384 26975 + GH106
TF HRGMv2_1569_6 HRGMv2_1569_6_26 27142 27996 + HTH_6
STP HRGMv2_1569_6 HRGMv2_1569_6_27 28341 29021 - Pribosyltran
TC HRGMv2_1569_6 HRGMv2_1569_6_28 29457 32225 + 3.A.3.4.1
TF HRGMv2_1569_6 HRGMv2_1569_6_29 32325 33869 - GerE
CAZyme HRGMv2_1569_6 HRGMv2_1569_6_30 34241 35554 - GH140
TC HRGMv2_1569_6 HRGMv2_1569_6_31 35764 37191 - 4.A.1.2.11
Gene ID: HRGMv2_1569_6_22
Type: TC
Location: 20990 - 21526 (-)
Gene ID: HRGMv2_1569_6_23
Type: CAZyme
Location: 21667 - 23106 (-)
Gene ID: HRGMv2_1569_6_24
Type: TF
Location: 23277 - 24269 (-)
Gene ID: HRGMv2_1569_6_25
Type: CAZyme
Location: 24384 - 26975 (+)
Gene ID: HRGMv2_1569_6_26
Type: TF
Location: 27142 - 27996 (+)
Gene ID: HRGMv2_1569_6_27
Type: STP
Location: 28341 - 29021 (-)
Gene ID: HRGMv2_1569_6_28
Type: TC
Location: 29457 - 32225 (+)
Gene ID: HRGMv2_1569_6_29
Type: TF
Location: 32325 - 33869 (-)
Gene ID: HRGMv2_1569_6_30
Type: CAZyme
Location: 34241 - 35554 (-)
Gene ID: HRGMv2_1569_6_31
Type: TC
Location: 35764 - 37191 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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