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Cluster: HRGMv2_1569_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1569_26 HRGMv2_1569_26_8 7628 8422 - 3.A.1.34.1
TC HRGMv2_1569_26 HRGMv2_1569_26_9 8415 9338 - 3.A.1.34.1
TC HRGMv2_1569_26 HRGMv2_1569_26_10 9543 10523 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1569_26 HRGMv2_1569_26_11 10684 11469 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1569_26 HRGMv2_1569_26_12 11719 13122 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1569_26 HRGMv2_1569_26_13 13304 13867 - 4.A.1.2.6
peptidase HRGMv2_1569_26 HRGMv2_1569_26_14 14112 15011 + S09.UPW
NULL(UNKNOWN) HRGMv2_1569_26 HRGMv2_1569_26_15 15059 15379 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1569_26 HRGMv2_1569_26_16 15501 17861 + 9.A.8.1.6
TC HRGMv2_1569_26 HRGMv2_1569_26_17 17982 19178 + 2.A.1.2.18
CAZyme HRGMv2_1569_26 HRGMv2_1569_26_18 19333 20709 + GH13_20
Gene ID: HRGMv2_1569_26_8
Type: TC
Location: 7628 - 8422 (-)
Gene ID: HRGMv2_1569_26_9
Type: TC
Location: 8415 - 9338 (-)
Gene ID: HRGMv2_1569_26_10
Type: TC
Location: 9543 - 10523 (-)
Gene ID: HRGMv2_1569_26_11
Type:
Location: 10684 - 11469 (-)
Gene ID: HRGMv2_1569_26_12
Type: pfam
Location: 11719 - 13122 (-)
Gene ID: HRGMv2_1569_26_13
Type: TC
Location: 13304 - 13867 (-)
Gene ID: HRGMv2_1569_26_14
Type: peptidase
Location: 14112 - 15011 (+)
Gene ID: HRGMv2_1569_26_15
Type:
Location: 15059 - 15379 (+)
Gene ID: HRGMv2_1569_26_16
Type: TC
Location: 15501 - 17861 (+)
Gene ID: HRGMv2_1569_26_17
Type: TC
Location: 17982 - 19178 (+)
Gene ID: HRGMv2_1569_26_18
Type: CAZyme
Location: 19333 - 20709 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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