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Cluster: HRGMv2_1565_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1565_32 HRGMv2_1565_32_17 16721 17890 - CE9
STP HRGMv2_1565_32 HRGMv2_1565_32_18 18009 19175 - SIS | SIS
TF HRGMv2_1565_32 HRGMv2_1565_32_19 19290 20021 - GntR
TC HRGMv2_1565_32 HRGMv2_1565_32_20 20207 21289 - 4.A.6.1.4
TC HRGMv2_1565_32 HRGMv2_1565_32_21 21279 22079 - 4.A.6.1.4
TC HRGMv2_1565_32 HRGMv2_1565_32_22 22170 22652 - 4.A.6.1.4
pfam HRGMv2_1565_32 HRGMv2_1565_32_23 22689 22970 - YajC
TC HRGMv2_1565_32 HRGMv2_1565_32_24 22970 23413 - 4.A.6.1.16
Gene ID: HRGMv2_1565_32_17
Type: CAZyme
Location: 16721 - 17890 (-)
Gene ID: HRGMv2_1565_32_18
Type: STP
Location: 18009 - 19175 (-)
Gene ID: HRGMv2_1565_32_19
Type: TF
Location: 19290 - 20021 (-)
Gene ID: HRGMv2_1565_32_20
Type: TC
Location: 20207 - 21289 (-)
Gene ID: HRGMv2_1565_32_21
Type: TC
Location: 21279 - 22079 (-)
Gene ID: HRGMv2_1565_32_22
Type: TC
Location: 22170 - 22652 (-)
Gene ID: HRGMv2_1565_32_23
Type: pfam
Location: 22689 - 22970 (-)
Gene ID: HRGMv2_1565_32_24
Type: TC
Location: 22970 - 23413 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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