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Cluster: HRGMv2_1563_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1563_27 HRGMv2_1563_27_4 3502 5952 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1563_27 HRGMv2_1563_27_5 5974 6093 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1563_27 HRGMv2_1563_27_6 6177 6896 + GntR
TC HRGMv2_1563_27 HRGMv2_1563_27_7 7203 8519 + 3.A.1.1.45
TC HRGMv2_1563_27 HRGMv2_1563_27_8 8607 9461 + 3.A.1.1.45
TC HRGMv2_1563_27 HRGMv2_1563_27_9 9461 10300 + 3.A.1.1.45
TC HRGMv2_1563_27 HRGMv2_1563_27_10 10369 11568 + 3.A.1.1.22
CAZyme HRGMv2_1563_27 HRGMv2_1563_27_11 12025 14292 - GT35
CAZyme HRGMv2_1563_27 HRGMv2_1563_27_12 14421 15926 - GH77
Gene ID: HRGMv2_1563_27_4
Type: TC
Location: 3502 - 5952 (-)
Gene ID: HRGMv2_1563_27_5
Type:
Location: 5974 - 6093 (+)
Gene ID: HRGMv2_1563_27_6
Type: TF
Location: 6177 - 6896 (+)
Gene ID: HRGMv2_1563_27_7
Type: TC
Location: 7203 - 8519 (+)
Gene ID: HRGMv2_1563_27_8
Type: TC
Location: 8607 - 9461 (+)
Gene ID: HRGMv2_1563_27_9
Type: TC
Location: 9461 - 10300 (+)
Gene ID: HRGMv2_1563_27_10
Type: TC
Location: 10369 - 11568 (+)
Gene ID: HRGMv2_1563_27_11
Type: CAZyme
Location: 12025 - 14292 (-)
Gene ID: HRGMv2_1563_27_12
Type: CAZyme
Location: 14421 - 15926 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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