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Cluster: HRGMv2_1563_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1563_16 HRGMv2_1563_16_6 6922 8304 - GH4
TC HRGMv2_1563_16 HRGMv2_1563_16_7 8308 9924 - 4.A.1.1.3
pfam HRGMv2_1563_16 HRGMv2_1563_16_8 10024 10890 - PRD | PRD | CAT_RBD
TC HRGMv2_1563_16 HRGMv2_1563_16_9 10897 11409 - 4.A.1.2.5
STP HRGMv2_1563_16 HRGMv2_1563_16_10 11704 12465 - Fer4
TC HRGMv2_1563_16 HRGMv2_1563_16_11 13087 15348 - 1.I.1.1.3
STP HRGMv2_1563_16 HRGMv2_1563_16_12 15948 16910 + FHA
STP HRGMv2_1563_16 HRGMv2_1563_16_13 17082 19166 + Pkinase
TC HRGMv2_1563_16 HRGMv2_1563_16_14 19497 21836 + 3.A.3.5.15
Gene ID: HRGMv2_1563_16_6
Type: CAZyme
Location: 6922 - 8304 (-)
Gene ID: HRGMv2_1563_16_7
Type: TC
Location: 8308 - 9924 (-)
Gene ID: HRGMv2_1563_16_8
Type: pfam
Location: 10024 - 10890 (-)
Gene ID: HRGMv2_1563_16_9
Type: TC
Location: 10897 - 11409 (-)
Gene ID: HRGMv2_1563_16_10
Type: STP
Location: 11704 - 12465 (-)
Gene ID: HRGMv2_1563_16_11
Type: TC
Location: 13087 - 15348 (-)
Gene ID: HRGMv2_1563_16_12
Type: STP
Location: 15948 - 16910 (+)
Gene ID: HRGMv2_1563_16_13
Type: STP
Location: 17082 - 19166 (+)
Gene ID: HRGMv2_1563_16_14
Type: TC
Location: 19497 - 21836 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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