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Cluster: HRGMv2_1563_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1563_11 HRGMv2_1563_11_2 2354 3148 - 3.A.1.34.1
TC HRGMv2_1563_11 HRGMv2_1563_11_3 3141 4064 - 3.A.1.34.1
TC HRGMv2_1563_11 HRGMv2_1563_11_4 4254 5234 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1563_11 HRGMv2_1563_11_5 5395 6180 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1563_11 HRGMv2_1563_11_6 6430 7833 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1563_11 HRGMv2_1563_11_7 8015 8578 - 4.A.1.2.6
peptidase HRGMv2_1563_11 HRGMv2_1563_11_8 8823 9722 + S09.UPW
NULL(UNKNOWN) HRGMv2_1563_11 HRGMv2_1563_11_9 9770 10090 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1563_11 HRGMv2_1563_11_10 10212 12572 + 9.A.8.1.6
TC HRGMv2_1563_11 HRGMv2_1563_11_11 12697 13893 + 2.A.1.2.18
CAZyme HRGMv2_1563_11 HRGMv2_1563_11_12 14241 15617 + GH13_20
Gene ID: HRGMv2_1563_11_2
Type: TC
Location: 2354 - 3148 (-)
Gene ID: HRGMv2_1563_11_3
Type: TC
Location: 3141 - 4064 (-)
Gene ID: HRGMv2_1563_11_4
Type: TC
Location: 4254 - 5234 (-)
Gene ID: HRGMv2_1563_11_5
Type:
Location: 5395 - 6180 (-)
Gene ID: HRGMv2_1563_11_6
Type: pfam
Location: 6430 - 7833 (-)
Gene ID: HRGMv2_1563_11_7
Type: TC
Location: 8015 - 8578 (-)
Gene ID: HRGMv2_1563_11_8
Type: peptidase
Location: 8823 - 9722 (+)
Gene ID: HRGMv2_1563_11_9
Type:
Location: 9770 - 10090 (+)
Gene ID: HRGMv2_1563_11_10
Type: TC
Location: 10212 - 12572 (+)
Gene ID: HRGMv2_1563_11_11
Type: TC
Location: 12697 - 13893 (+)
Gene ID: HRGMv2_1563_11_12
Type: CAZyme
Location: 14241 - 15617 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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