dbCAN Logo

Cluster: HRGMv2_1563_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1563_74 HRGMv2_1563_74_1 517 960 + 4.A.6.1.16
pfam HRGMv2_1563_74 HRGMv2_1563_74_2 960 1241 + YajC
TC HRGMv2_1563_74 HRGMv2_1563_74_3 1278 1760 + 4.A.6.1.4
TC HRGMv2_1563_74 HRGMv2_1563_74_4 1851 2651 + 4.A.6.1.4
TC HRGMv2_1563_74 HRGMv2_1563_74_5 2641 3723 + 4.A.6.1.4
TF HRGMv2_1563_74 HRGMv2_1563_74_6 3908 4639 + GntR
STP HRGMv2_1563_74 HRGMv2_1563_74_7 4754 5920 + SIS | SIS
CAZyme HRGMv2_1563_74 HRGMv2_1563_74_8 6038 7207 + CE9
Gene ID: HRGMv2_1563_74_1
Type: TC
Location: 517 - 960 (+)
Gene ID: HRGMv2_1563_74_2
Type: pfam
Location: 960 - 1241 (+)
Gene ID: HRGMv2_1563_74_3
Type: TC
Location: 1278 - 1760 (+)
Gene ID: HRGMv2_1563_74_4
Type: TC
Location: 1851 - 2651 (+)
Gene ID: HRGMv2_1563_74_5
Type: TC
Location: 2641 - 3723 (+)
Gene ID: HRGMv2_1563_74_6
Type: TF
Location: 3908 - 4639 (+)
Gene ID: HRGMv2_1563_74_7
Type: STP
Location: 4754 - 5920 (+)
Gene ID: HRGMv2_1563_74_8
Type: CAZyme
Location: 6038 - 7207 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1563_74_2 vegan > omnivore 1.11358 0.00863

🧭 Explore Read Mapping of CGC

← Back to Cluster List