Cluster: HRGMv2_1562_CGC8

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_1562_18	HRGMv2_1562_18_7	6833	8818	-	GT2
CAZyme	HRGMv2_1562_18	HRGMv2_1562_18_8	9014	10150	+	GT2
TC	HRGMv2_1562_18	HRGMv2_1562_18_9	10308	11120	+	3.A.1.103.4
TC	HRGMv2_1562_18	HRGMv2_1562_18_10	11130	11885	+	3.A.1.103.1
CAZyme	HRGMv2_1562_18	HRGMv2_1562_18_11	11887	13002	+	GT2
CAZyme	HRGMv2_1562_18	HRGMv2_1562_18_12	13011	14069	+	GT2
CAZyme	HRGMv2_1562_18	HRGMv2_1562_18_13	14091	15326	+	GT4

Gene ID: HRGMv2_1562_18_7
Type: CAZyme
Location: 6833 - 8818 (-)

Gene ID: HRGMv2_1562_18_8
Type: CAZyme
Location: 9014 - 10150 (+)

Gene ID: HRGMv2_1562_18_9
Type: TC
Location: 10308 - 11120 (+)

Gene ID: HRGMv2_1562_18_10
Type: TC
Location: 11130 - 11885 (+)

Gene ID: HRGMv2_1562_18_11
Type: CAZyme
Location: 11887 - 13002 (+)

Gene ID: HRGMv2_1562_18_12
Type: CAZyme
Location: 13011 - 14069 (+)

Gene ID: HRGMv2_1562_18_13
Type: CAZyme
Location: 14091 - 15326 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1562_18_8	vegetarian > omnivore	1.38278	0.03791
HRGMv2_1562_18_8	vegetarian > vegan	2.33020	0.02674
HRGMv2_1562_18_9	vegetarian > vegan	2.67085	0.02674
HRGMv2_1562_18_11	vegetarian > omnivore	2.21499	0.03791
HRGMv2_1562_18_12	vegetarian > omnivore	2.10915	0.03791
HRGMv2_1562_18_12	vegetarian > vegan	3.84115	0.02674
HRGMv2_1562_18_13	vegetarian > omnivore	1.93080	0.03791
HRGMv2_1562_18_13	vegetarian > vegan	3.69809	0.02674