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Cluster: HRGMv2_1562_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1562_16 HRGMv2_1562_16_6 6728 7558 - 3.A.1.132.3
pfam HRGMv2_1562_16 HRGMv2_1562_16_7 7818 10697 + UvrA_DNA-bind | UvrA_inter
pfam HRGMv2_1562_16 HRGMv2_1562_16_8 10832 11332 + tRNA_edit
TC HRGMv2_1562_16 HRGMv2_1562_16_9 11336 13636 + 2.A.66.4.4
pfam HRGMv2_1562_16 HRGMv2_1562_16_10 13643 15583 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1562_16 HRGMv2_1562_16_11 15948 17561 + 3.A.1.5.27
TC HRGMv2_1562_16 HRGMv2_1562_16_12 17717 18673 + 3.A.1.5.38
TC HRGMv2_1562_16 HRGMv2_1562_16_13 18677 20692 + 3.A.1.5.25
TC HRGMv2_1562_16 HRGMv2_1562_16_14 20693 21520 + 3.A.1.5.27
CAZyme HRGMv2_1562_16 HRGMv2_1562_16_15 21652 22578 + CE7
Gene ID: HRGMv2_1562_16_6
Type: TC
Location: 6728 - 7558 (-)
Gene ID: HRGMv2_1562_16_7
Type: pfam
Location: 7818 - 10697 (+)
Gene ID: HRGMv2_1562_16_8
Type: pfam
Location: 10832 - 11332 (+)
Gene ID: HRGMv2_1562_16_9
Type: TC
Location: 11336 - 13636 (+)
Gene ID: HRGMv2_1562_16_10
Type: pfam
Location: 13643 - 15583 (+)
Gene ID: HRGMv2_1562_16_11
Type: TC
Location: 15948 - 17561 (+)
Gene ID: HRGMv2_1562_16_12
Type: TC
Location: 17717 - 18673 (+)
Gene ID: HRGMv2_1562_16_13
Type: TC
Location: 18677 - 20692 (+)
Gene ID: HRGMv2_1562_16_14
Type: TC
Location: 20693 - 21520 (+)
Gene ID: HRGMv2_1562_16_15
Type: CAZyme
Location: 21652 - 22578 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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