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Cluster: HRGMv2_1562_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1562_13 HRGMv2_1562_13_48 46158 47663 + GH77
CAZyme HRGMv2_1562_13 HRGMv2_1562_13_49 47792 50059 + GT35
TC HRGMv2_1562_13 HRGMv2_1562_13_50 50596 51795 - 3.A.1.1.22
TC HRGMv2_1562_13 HRGMv2_1562_13_51 51864 52703 - 3.A.1.1.45
TC HRGMv2_1562_13 HRGMv2_1562_13_52 52703 53557 - 3.A.1.1.45
TC HRGMv2_1562_13 HRGMv2_1562_13_53 53645 54961 - 3.A.1.1.45
TF HRGMv2_1562_13 HRGMv2_1562_13_54 55255 55974 - GntR
NULL(UNKNOWN) HRGMv2_1562_13 HRGMv2_1562_13_55 56061 56177 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1562_13 HRGMv2_1562_13_56 56199 58649 + 4.A.1.1.8
Gene ID: HRGMv2_1562_13_48
Type: CAZyme
Location: 46158 - 47663 (+)
Gene ID: HRGMv2_1562_13_49
Type: CAZyme
Location: 47792 - 50059 (+)
Gene ID: HRGMv2_1562_13_50
Type: TC
Location: 50596 - 51795 (-)
Gene ID: HRGMv2_1562_13_51
Type: TC
Location: 51864 - 52703 (-)
Gene ID: HRGMv2_1562_13_52
Type: TC
Location: 52703 - 53557 (-)
Gene ID: HRGMv2_1562_13_53
Type: TC
Location: 53645 - 54961 (-)
Gene ID: HRGMv2_1562_13_54
Type: TF
Location: 55255 - 55974 (-)
Gene ID: HRGMv2_1562_13_55
Type:
Location: 56061 - 56177 (-)
Gene ID: HRGMv2_1562_13_56
Type: TC
Location: 56199 - 58649 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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