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Cluster: HRGMv2_1562_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1562_12 HRGMv2_1562_12_39 45470 46639 - CE9
STP HRGMv2_1562_12 HRGMv2_1562_12_40 46758 47924 - SIS | SIS
TF HRGMv2_1562_12 HRGMv2_1562_12_41 48039 48770 - GntR
TC HRGMv2_1562_12 HRGMv2_1562_12_42 48956 50038 - 4.A.6.1.4
TC HRGMv2_1562_12 HRGMv2_1562_12_43 50028 50828 - 4.A.6.1.4
TC HRGMv2_1562_12 HRGMv2_1562_12_44 50918 51400 - 4.A.6.1.4
pfam HRGMv2_1562_12 HRGMv2_1562_12_45 51437 51718 - YajC
TC HRGMv2_1562_12 HRGMv2_1562_12_46 51718 52161 - 4.A.6.1.16
Gene ID: HRGMv2_1562_12_39
Type: CAZyme
Location: 45470 - 46639 (-)
Gene ID: HRGMv2_1562_12_40
Type: STP
Location: 46758 - 47924 (-)
Gene ID: HRGMv2_1562_12_41
Type: TF
Location: 48039 - 48770 (-)
Gene ID: HRGMv2_1562_12_42
Type: TC
Location: 48956 - 50038 (-)
Gene ID: HRGMv2_1562_12_43
Type: TC
Location: 50028 - 50828 (-)
Gene ID: HRGMv2_1562_12_44
Type: TC
Location: 50918 - 51400 (-)
Gene ID: HRGMv2_1562_12_45
Type: pfam
Location: 51437 - 51718 (-)
Gene ID: HRGMv2_1562_12_46
Type: TC
Location: 51718 - 52161 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1562_12_45 vegan > omnivore 1.07688 0.00566

🧭 Explore Read Mapping of CGC

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