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Cluster: HRGMv2_1562_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1562_12 HRGMv2_1562_12_20 22002 22340 - 4.A.3.1.2
TF HRGMv2_1562_12 HRGMv2_1562_12_21 22555 23559 - LacI
TC HRGMv2_1562_12 HRGMv2_1562_12_22 23917 25692 + 4.A.3.1.1
CAZyme HRGMv2_1562_12 HRGMv2_1562_12_23 25759 27198 + GH1
TF HRGMv2_1562_12 HRGMv2_1562_12_24 27534 28544 - LacI
TC HRGMv2_1562_12 HRGMv2_1562_12_25 28821 30599 + 4.A.3.1.1
CAZyme HRGMv2_1562_12 HRGMv2_1562_12_26 30675 32096 + GH1
pfam HRGMv2_1562_12 HRGMv2_1562_12_27 32463 33695 + Fic
STP HRGMv2_1562_12 HRGMv2_1562_12_28 33801 34196 - DeoRC
TC HRGMv2_1562_12 HRGMv2_1562_12_29 34359 36053 - 4.A.3.1.1
Gene ID: HRGMv2_1562_12_20
Type: TC
Location: 22002 - 22340 (-)
Gene ID: HRGMv2_1562_12_21
Type: TF
Location: 22555 - 23559 (-)
Gene ID: HRGMv2_1562_12_22
Type: TC
Location: 23917 - 25692 (+)
Gene ID: HRGMv2_1562_12_23
Type: CAZyme
Location: 25759 - 27198 (+)
Gene ID: HRGMv2_1562_12_24
Type: TF
Location: 27534 - 28544 (-)
Gene ID: HRGMv2_1562_12_25
Type: TC
Location: 28821 - 30599 (+)
Gene ID: HRGMv2_1562_12_26
Type: CAZyme
Location: 30675 - 32096 (+)
Gene ID: HRGMv2_1562_12_27
Type: pfam
Location: 32463 - 33695 (+)
Gene ID: HRGMv2_1562_12_28
Type: STP
Location: 33801 - 34196 (-)
Gene ID: HRGMv2_1562_12_29
Type: TC
Location: 34359 - 36053 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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