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Cluster: HRGMv2_1561_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1561_15 HRGMv2_1561_15_5 6437 7378 + 2.A.7.18.1
pfam HRGMv2_1561_15 HRGMv2_1561_15_6 7443 9587 - Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Peptidase_C39_2 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3
CAZyme HRGMv2_1561_15 HRGMv2_1561_15_7 9688 11460 - GH25
pfam HRGMv2_1561_15 HRGMv2_1561_15_8 11622 12632 + Acyl_transf_3
CAZyme HRGMv2_1561_15 HRGMv2_1561_15_9 12657 13685 - GT2
CAZyme HRGMv2_1561_15 HRGMv2_1561_15_10 13693 14796 - GT2
pfam HRGMv2_1561_15 HRGMv2_1561_15_11 14908 16053 + Acyl_transf_3
NULL(UNKNOWN) HRGMv2_1561_15 HRGMv2_1561_15_12 16050 17420 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1561_15 HRGMv2_1561_15_13 17635 18654 + GT2
Gene ID: HRGMv2_1561_15_5
Type: TC
Location: 6437 - 7378 (+)
Gene ID: HRGMv2_1561_15_6
Type: pfam
Location: 7443 - 9587 (-)
Gene ID: HRGMv2_1561_15_7
Type: CAZyme
Location: 9688 - 11460 (-)
Gene ID: HRGMv2_1561_15_8
Type: pfam
Location: 11622 - 12632 (+)
Gene ID: HRGMv2_1561_15_9
Type: CAZyme
Location: 12657 - 13685 (-)
Gene ID: HRGMv2_1561_15_10
Type: CAZyme
Location: 13693 - 14796 (-)
Gene ID: HRGMv2_1561_15_11
Type: pfam
Location: 14908 - 16053 (+)
Gene ID: HRGMv2_1561_15_12
Type:
Location: 16050 - 17420 (-)
Gene ID: HRGMv2_1561_15_13
Type: CAZyme
Location: 17635 - 18654 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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