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Cluster: HRGMv2_1561_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1561_26 HRGMv2_1561_26_11 11726 13126 + GH1
STP HRGMv2_1561_26 HRGMv2_1561_26_12 13247 13834 + PTS_EIIC
TC HRGMv2_1561_26 HRGMv2_1561_26_13 13803 14600 + 4.A.3.2.9
TC HRGMv2_1561_26 HRGMv2_1561_26_14 14755 15057 + 4.A.3.2.9
TC HRGMv2_1561_26 HRGMv2_1561_26_15 15067 15399 + 4.A.3.2.3
STP HRGMv2_1561_26 HRGMv2_1561_26_16 15641 16594 + Glucokinase
pfam HRGMv2_1561_26 HRGMv2_1561_26_17 16763 17686 + DHH | DHHA2
TC HRGMv2_1561_26 HRGMv2_1561_26_18 17954 19312 + 2.A.33.1.1
Gene ID: HRGMv2_1561_26_11
Type: CAZyme
Location: 11726 - 13126 (+)
Gene ID: HRGMv2_1561_26_12
Type: STP
Location: 13247 - 13834 (+)
Gene ID: HRGMv2_1561_26_13
Type: TC
Location: 13803 - 14600 (+)
Gene ID: HRGMv2_1561_26_14
Type: TC
Location: 14755 - 15057 (+)
Gene ID: HRGMv2_1561_26_15
Type: TC
Location: 15067 - 15399 (+)
Gene ID: HRGMv2_1561_26_16
Type: STP
Location: 15641 - 16594 (+)
Gene ID: HRGMv2_1561_26_17
Type: pfam
Location: 16763 - 17686 (+)
Gene ID: HRGMv2_1561_26_18
Type: TC
Location: 17954 - 19312 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1561_26_14 vegan > omnivore 1.01535 0.00701

🧭 Explore Read Mapping of CGC

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