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Cluster: HRGMv2_1561_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1561_25 HRGMv2_1561_25_1 1 1140 + 2.A.66.4.4
pfam HRGMv2_1561_25 HRGMv2_1561_25_2 1147 3087 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1561_25 HRGMv2_1561_25_3 3453 5066 + 3.A.1.5.27
TC HRGMv2_1561_25 HRGMv2_1561_25_4 5224 6180 + 3.A.1.5.38
TC HRGMv2_1561_25 HRGMv2_1561_25_5 6184 8199 + 3.A.1.5.25
TC HRGMv2_1561_25 HRGMv2_1561_25_6 8200 9027 + 3.A.1.5.27
CAZyme HRGMv2_1561_25 HRGMv2_1561_25_7 9159 10085 + CE7
Gene ID: HRGMv2_1561_25_1
Type: TC
Location: 1 - 1140 (+)
Gene ID: HRGMv2_1561_25_2
Type: pfam
Location: 1147 - 3087 (+)
Gene ID: HRGMv2_1561_25_3
Type: TC
Location: 3453 - 5066 (+)
Gene ID: HRGMv2_1561_25_4
Type: TC
Location: 5224 - 6180 (+)
Gene ID: HRGMv2_1561_25_5
Type: TC
Location: 6184 - 8199 (+)
Gene ID: HRGMv2_1561_25_6
Type: TC
Location: 8200 - 9027 (+)
Gene ID: HRGMv2_1561_25_7
Type: CAZyme
Location: 9159 - 10085 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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