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Cluster: HRGMv2_1561_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1561_24 HRGMv2_1561_24_19 18420 19589 - CE9
STP HRGMv2_1561_24 HRGMv2_1561_24_20 19708 20874 - SIS | SIS
TF HRGMv2_1561_24 HRGMv2_1561_24_21 20988 21719 - GntR
TC HRGMv2_1561_24 HRGMv2_1561_24_22 21905 22987 - 4.A.6.1.4
TC HRGMv2_1561_24 HRGMv2_1561_24_23 22977 23777 - 4.A.6.1.4
TC HRGMv2_1561_24 HRGMv2_1561_24_24 23868 24350 - 4.A.6.1.4
pfam HRGMv2_1561_24 HRGMv2_1561_24_25 24387 24668 - YajC
TC HRGMv2_1561_24 HRGMv2_1561_24_26 24668 25111 - 4.A.6.1.16
Gene ID: HRGMv2_1561_24_19
Type: CAZyme
Location: 18420 - 19589 (-)
Gene ID: HRGMv2_1561_24_20
Type: STP
Location: 19708 - 20874 (-)
Gene ID: HRGMv2_1561_24_21
Type: TF
Location: 20988 - 21719 (-)
Gene ID: HRGMv2_1561_24_22
Type: TC
Location: 21905 - 22987 (-)
Gene ID: HRGMv2_1561_24_23
Type: TC
Location: 22977 - 23777 (-)
Gene ID: HRGMv2_1561_24_24
Type: TC
Location: 23868 - 24350 (-)
Gene ID: HRGMv2_1561_24_25
Type: pfam
Location: 24387 - 24668 (-)
Gene ID: HRGMv2_1561_24_26
Type: TC
Location: 24668 - 25111 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1561_24_25 vegan > omnivore 1.08432 0.00701

🧭 Explore Read Mapping of CGC

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