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Cluster: HRGMv2_1560_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1560_5 HRGMv2_1560_5_8 5699 8041 - 3.A.3.5.15
STP HRGMv2_1560_5 HRGMv2_1560_5_9 8372 10456 - Pkinase
STP HRGMv2_1560_5 HRGMv2_1560_5_10 10628 11590 - FHA
TC HRGMv2_1560_5 HRGMv2_1560_5_11 12190 14454 + 1.I.1.1.3
STP HRGMv2_1560_5 HRGMv2_1560_5_12 15079 15840 + Fer4
TC HRGMv2_1560_5 HRGMv2_1560_5_13 16117 16629 + 4.A.1.2.5
pfam HRGMv2_1560_5 HRGMv2_1560_5_14 16636 17490 + PRD | PRD | CAT_RBD
TC HRGMv2_1560_5 HRGMv2_1560_5_15 17590 19206 + 4.A.1.1.3
CAZyme HRGMv2_1560_5 HRGMv2_1560_5_16 19210 20592 + GH4
Gene ID: HRGMv2_1560_5_8
Type: TC
Location: 5699 - 8041 (-)
Gene ID: HRGMv2_1560_5_9
Type: STP
Location: 8372 - 10456 (-)
Gene ID: HRGMv2_1560_5_10
Type: STP
Location: 10628 - 11590 (-)
Gene ID: HRGMv2_1560_5_11
Type: TC
Location: 12190 - 14454 (+)
Gene ID: HRGMv2_1560_5_12
Type: STP
Location: 15079 - 15840 (+)
Gene ID: HRGMv2_1560_5_13
Type: TC
Location: 16117 - 16629 (+)
Gene ID: HRGMv2_1560_5_14
Type: pfam
Location: 16636 - 17490 (+)
Gene ID: HRGMv2_1560_5_15
Type: TC
Location: 17590 - 19206 (+)
Gene ID: HRGMv2_1560_5_16
Type: CAZyme
Location: 19210 - 20592 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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