Cluster: HRGMv2_1560_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1560
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1560_2 | HRGMv2_1560_2_3 | 1887 | 3722 | + | GT2 |
| pfam | HRGMv2_1560_2 | HRGMv2_1560_2_4 | 3822 | 4712 | + | LicD |
| NULL(UNKNOWN) | HRGMv2_1560_2 | HRGMv2_1560_2_5 | 4718 | 4828 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1560_2 | HRGMv2_1560_2_6 | 5041 | 6882 | + | GT2 |
| CAZyme | HRGMv2_1560_2 | HRGMv2_1560_2_7 | 6914 | 7843 | - | GT81 |
| TC | HRGMv2_1560_2 | HRGMv2_1560_2_8 | 8005 | 8850 | + | 3.A.1.103.6 |
| TC | HRGMv2_1560_2 | HRGMv2_1560_2_9 | 8863 | 9630 | + | 3.A.1.103.1 |
Gene ID: HRGMv2_1560_2_3
Type: CAZyme
Location: 1887 - 3722 (+)
Type: CAZyme
Location: 1887 - 3722 (+)
Gene ID: HRGMv2_1560_2_4
Type: pfam
Location: 3822 - 4712 (+)
Type: pfam
Location: 3822 - 4712 (+)
Gene ID: HRGMv2_1560_2_5
Type:
Location: 4718 - 4828 (-)
Type:
Location: 4718 - 4828 (-)
Gene ID: HRGMv2_1560_2_6
Type: CAZyme
Location: 5041 - 6882 (+)
Type: CAZyme
Location: 5041 - 6882 (+)
Gene ID: HRGMv2_1560_2_7
Type: CAZyme
Location: 6914 - 7843 (-)
Type: CAZyme
Location: 6914 - 7843 (-)
Gene ID: HRGMv2_1560_2_8
Type: TC
Location: 8005 - 8850 (+)
Type: TC
Location: 8005 - 8850 (+)
Gene ID: HRGMv2_1560_2_9
Type: TC
Location: 8863 - 9630 (+)
Type: TC
Location: 8863 - 9630 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1560_2_3 | vegan > omnivore | 9.97377 | 0.01332 |
| HRGMv2_1560_2_4 | vegan > omnivore | 17.80760 | 0.01332 |
| HRGMv2_1560_2_5 | vegan > omnivore | 19.04575 | 0.01332 |
| HRGMv2_1560_2_6 | vegan > omnivore | 17.56027 | 0.01332 |
| HRGMv2_1560_2_6 | vegetarian > omnivore | 12.51371 | 0.04391 |
| HRGMv2_1560_2_7 | vegan > omnivore | 1.61469 | 0.01332 |
| HRGMv2_1560_2_8 | vegan > omnivore | 2.06014 | 0.01332 |