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Cluster: HRGMv2_1560_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1560_18 HRGMv2_1560_18_10 13624 15306 + 2.A.66.4.4
pfam HRGMv2_1560_18 HRGMv2_1560_18_11 15313 17253 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1560_18 HRGMv2_1560_18_12 17619 19232 + 3.A.1.5.27
TC HRGMv2_1560_18 HRGMv2_1560_18_13 19390 20346 + 3.A.1.5.38
TC HRGMv2_1560_18 HRGMv2_1560_18_14 20350 22365 + 3.A.1.5.25
TC HRGMv2_1560_18 HRGMv2_1560_18_15 22366 23193 + 3.A.1.5.27
CAZyme HRGMv2_1560_18 HRGMv2_1560_18_16 23367 24251 + CE7
Gene ID: HRGMv2_1560_18_10
Type: TC
Location: 13624 - 15306 (+)
Gene ID: HRGMv2_1560_18_11
Type: pfam
Location: 15313 - 17253 (+)
Gene ID: HRGMv2_1560_18_12
Type: TC
Location: 17619 - 19232 (+)
Gene ID: HRGMv2_1560_18_13
Type: TC
Location: 19390 - 20346 (+)
Gene ID: HRGMv2_1560_18_14
Type: TC
Location: 20350 - 22365 (+)
Gene ID: HRGMv2_1560_18_15
Type: TC
Location: 22366 - 23193 (+)
Gene ID: HRGMv2_1560_18_16
Type: CAZyme
Location: 23367 - 24251 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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