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Cluster: HRGMv2_1560_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1560_7 HRGMv2_1560_7_43 46929 47696 - 1.A.23.4.2
TC HRGMv2_1560_7 HRGMv2_1560_7_44 47844 48638 - 3.A.1.34.1
TC HRGMv2_1560_7 HRGMv2_1560_7_45 48631 49554 - 3.A.1.34.1
TC HRGMv2_1560_7 HRGMv2_1560_7_46 49759 50739 - 3.A.1.34.1
pfam HRGMv2_1560_7 HRGMv2_1560_7_47 50899 51687 - WYL
pfam HRGMv2_1560_7 HRGMv2_1560_7_48 51942 53345 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1560_7 HRGMv2_1560_7_49 53482 55416 - 9.B.97.5.1
TC HRGMv2_1560_7 HRGMv2_1560_7_50 55652 56293 - 4.A.1.2.6
peptidase HRGMv2_1560_7 HRGMv2_1560_7_51 56462 57361 + S09.UPW
NULL(UNKNOWN) HRGMv2_1560_7 HRGMv2_1560_7_52 57409 57729 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1560_7 HRGMv2_1560_7_53 57851 60211 + 9.A.8.1.6
TC HRGMv2_1560_7 HRGMv2_1560_7_54 60335 61531 + 2.A.1.2.18
CAZyme HRGMv2_1560_7 HRGMv2_1560_7_55 61685 63061 + GH13_20
Gene ID: HRGMv2_1560_7_43
Type: TC
Location: 46929 - 47696 (-)
Gene ID: HRGMv2_1560_7_44
Type: TC
Location: 47844 - 48638 (-)
Gene ID: HRGMv2_1560_7_45
Type: TC
Location: 48631 - 49554 (-)
Gene ID: HRGMv2_1560_7_46
Type: TC
Location: 49759 - 50739 (-)
Gene ID: HRGMv2_1560_7_47
Type: pfam
Location: 50899 - 51687 (-)
Gene ID: HRGMv2_1560_7_48
Type: pfam
Location: 51942 - 53345 (-)
Gene ID: HRGMv2_1560_7_49
Type: TC
Location: 53482 - 55416 (-)
Gene ID: HRGMv2_1560_7_50
Type: TC
Location: 55652 - 56293 (-)
Gene ID: HRGMv2_1560_7_51
Type: peptidase
Location: 56462 - 57361 (+)
Gene ID: HRGMv2_1560_7_52
Type:
Location: 57409 - 57729 (+)
Gene ID: HRGMv2_1560_7_53
Type: TC
Location: 57851 - 60211 (+)
Gene ID: HRGMv2_1560_7_54
Type: TC
Location: 60335 - 61531 (+)
Gene ID: HRGMv2_1560_7_55
Type: CAZyme
Location: 61685 - 63061 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1560_7_49 vegan > omnivore 1.22015 0.01332
HRGMv2_1560_7_49 vegetarian > omnivore 1.53371 0.04391

🧭 Explore Read Mapping of CGC

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