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Cluster: HRGMv2_1559_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1559_3 HRGMv2_1559_3_84 59626 59859 + 1.E.18.1.3
pfam HRGMv2_1559_3 HRGMv2_1559_3_85 59907 60458 + Peptidase_C39_2
CAZyme HRGMv2_1559_3 HRGMv2_1559_3_86 60461 61522 + CBM50 | GH25
pfam HRGMv2_1559_3 HRGMv2_1559_3_87 62040 64127 - Gln-synt_C | GSIII_N | Gln-synt_C-ter
CAZyme HRGMv2_1559_3 HRGMv2_1559_3_88 64556 65995 - GH1
pfam HRGMv2_1559_3 HRGMv2_1559_3_89 65988 66338 - PTS_IIA
TC HRGMv2_1559_3 HRGMv2_1559_3_90 66417 67676 - 4.A.3.2.2
Gene ID: HRGMv2_1559_3_84
Type: TC
Location: 59626 - 59859 (+)
Gene ID: HRGMv2_1559_3_85
Type: pfam
Location: 59907 - 60458 (+)
Gene ID: HRGMv2_1559_3_86
Type: CAZyme
Location: 60461 - 61522 (+)
Gene ID: HRGMv2_1559_3_87
Type: pfam
Location: 62040 - 64127 (-)
Gene ID: HRGMv2_1559_3_88
Type: CAZyme
Location: 64556 - 65995 (-)
Gene ID: HRGMv2_1559_3_89
Type: pfam
Location: 65988 - 66338 (-)
Gene ID: HRGMv2_1559_3_90
Type: TC
Location: 66417 - 67676 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1559_3_86 vegan > omnivore 3.67414 0.01057
HRGMv2_1559_3_86 vegetarian > omnivore 4.15584 0.03928

🧭 Explore Read Mapping of CGC

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