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Cluster: HRGMv2_1559_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1559_2 HRGMv2_1559_2_142 163302 164723 - GH1
TC HRGMv2_1559_2 HRGMv2_1559_2_143 164800 166590 - 4.A.3.1.1
TF HRGMv2_1559_2 HRGMv2_1559_2_144 166867 167877 + LacI
CAZyme HRGMv2_1559_2 HRGMv2_1559_2_145 168222 169661 - GH1
TC HRGMv2_1559_2 HRGMv2_1559_2_146 169728 171497 - 4.A.3.1.1
TF HRGMv2_1559_2 HRGMv2_1559_2_147 171854 172858 + LacI
TC HRGMv2_1559_2 HRGMv2_1559_2_148 173073 173411 + 4.A.3.1.2
Gene ID: HRGMv2_1559_2_142
Type: CAZyme
Location: 163302 - 164723 (-)
Gene ID: HRGMv2_1559_2_143
Type: TC
Location: 164800 - 166590 (-)
Gene ID: HRGMv2_1559_2_144
Type: TF
Location: 166867 - 167877 (+)
Gene ID: HRGMv2_1559_2_145
Type: CAZyme
Location: 168222 - 169661 (-)
Gene ID: HRGMv2_1559_2_146
Type: TC
Location: 169728 - 171497 (-)
Gene ID: HRGMv2_1559_2_147
Type: TF
Location: 171854 - 172858 (+)
Gene ID: HRGMv2_1559_2_148
Type: TC
Location: 173073 - 173411 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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