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Cluster: HRGMv2_1559_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1559_2 HRGMv2_1559_2_124 147832 148275 + 4.A.6.1.16
pfam HRGMv2_1559_2 HRGMv2_1559_2_125 148275 148556 + YajC
TC HRGMv2_1559_2 HRGMv2_1559_2_126 148593 149075 + 4.A.6.1.4
TC HRGMv2_1559_2 HRGMv2_1559_2_127 149166 149966 + 4.A.6.1.4
TC HRGMv2_1559_2 HRGMv2_1559_2_128 149956 151038 + 4.A.6.1.4
TF HRGMv2_1559_2 HRGMv2_1559_2_129 151224 151955 + GntR
STP HRGMv2_1559_2 HRGMv2_1559_2_130 152070 153236 + SIS | SIS
CAZyme HRGMv2_1559_2 HRGMv2_1559_2_131 153354 154523 + CE9
Gene ID: HRGMv2_1559_2_124
Type: TC
Location: 147832 - 148275 (+)
Gene ID: HRGMv2_1559_2_125
Type: pfam
Location: 148275 - 148556 (+)
Gene ID: HRGMv2_1559_2_126
Type: TC
Location: 148593 - 149075 (+)
Gene ID: HRGMv2_1559_2_127
Type: TC
Location: 149166 - 149966 (+)
Gene ID: HRGMv2_1559_2_128
Type: TC
Location: 149956 - 151038 (+)
Gene ID: HRGMv2_1559_2_129
Type: TF
Location: 151224 - 151955 (+)
Gene ID: HRGMv2_1559_2_130
Type: STP
Location: 152070 - 153236 (+)
Gene ID: HRGMv2_1559_2_131
Type: CAZyme
Location: 153354 - 154523 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1559_2_125 vegan > omnivore 1.09440 0.01057

🧭 Explore Read Mapping of CGC

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