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Cluster: HRGMv2_1559_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1559_2 HRGMv2_1559_2_11 15244 17694 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1559_2 HRGMv2_1559_2_12 17716 17835 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1559_2 HRGMv2_1559_2_13 17919 18638 + GntR
TC HRGMv2_1559_2 HRGMv2_1559_2_14 18945 20261 + 3.A.1.1.45
TC HRGMv2_1559_2 HRGMv2_1559_2_15 20349 21203 + 3.A.1.1.45
TC HRGMv2_1559_2 HRGMv2_1559_2_16 21203 22042 + 3.A.1.1.45
TC HRGMv2_1559_2 HRGMv2_1559_2_17 22111 23310 + 3.A.1.1.22
CAZyme HRGMv2_1559_2 HRGMv2_1559_2_18 23768 26035 - GT35
CAZyme HRGMv2_1559_2 HRGMv2_1559_2_19 26164 27669 - GH77
Gene ID: HRGMv2_1559_2_11
Type: TC
Location: 15244 - 17694 (-)
Gene ID: HRGMv2_1559_2_12
Type:
Location: 17716 - 17835 (+)
Gene ID: HRGMv2_1559_2_13
Type: TF
Location: 17919 - 18638 (+)
Gene ID: HRGMv2_1559_2_14
Type: TC
Location: 18945 - 20261 (+)
Gene ID: HRGMv2_1559_2_15
Type: TC
Location: 20349 - 21203 (+)
Gene ID: HRGMv2_1559_2_16
Type: TC
Location: 21203 - 22042 (+)
Gene ID: HRGMv2_1559_2_17
Type: TC
Location: 22111 - 23310 (+)
Gene ID: HRGMv2_1559_2_18
Type: CAZyme
Location: 23768 - 26035 (-)
Gene ID: HRGMv2_1559_2_19
Type: CAZyme
Location: 26164 - 27669 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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