Cluster: HRGMv2_1559_CGC14
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1559
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1559_10 | HRGMv2_1559_10_19 | 20388 | 21095 | + | 1.C.82.1.1 |
| pfam | HRGMv2_1559_10 | HRGMv2_1559_10_20 | 21221 | 21931 | - | Metallophos | Metallophos_2 |
| pfam | HRGMv2_1559_10 | HRGMv2_1559_10_21 | 21928 | 23844 | - | Bmp |
| TC | HRGMv2_1559_10 | HRGMv2_1559_10_22 | 23938 | 24705 | - | 1.A.23.4.2 |
| pfam | HRGMv2_1559_10 | HRGMv2_1559_10_23 | 24834 | 26864 | - | Metallophos | 5_nucleotid_C |
| TC | HRGMv2_1559_10 | HRGMv2_1559_10_24 | 27023 | 27817 | - | 3.A.1.34.1 |
| TC | HRGMv2_1559_10 | HRGMv2_1559_10_25 | 27810 | 28733 | - | 3.A.1.34.1 |
| TC | HRGMv2_1559_10 | HRGMv2_1559_10_26 | 28938 | 29918 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | HRGMv2_1559_10 | HRGMv2_1559_10_27 | 30079 | 30864 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1559_10 | HRGMv2_1559_10_28 | 31114 | 32517 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | HRGMv2_1559_10 | HRGMv2_1559_10_29 | 32699 | 33262 | - | 4.A.1.2.6 |
| peptidase | HRGMv2_1559_10 | HRGMv2_1559_10_30 | 33509 | 34408 | + | S09.UPW |
| NULL(UNKNOWN) | HRGMv2_1559_10 | HRGMv2_1559_10_31 | 34456 | 34776 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1559_10 | HRGMv2_1559_10_32 | 34898 | 37258 | + | 9.A.8.1.6 |
| TC | HRGMv2_1559_10 | HRGMv2_1559_10_33 | 37380 | 38576 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_1559_10 | HRGMv2_1559_10_34 | 38730 | 40106 | + | GH13_20 |
Gene ID: HRGMv2_1559_10_19
Type: TC
Location: 20388 - 21095 (+)
Type: TC
Location: 20388 - 21095 (+)
Gene ID: HRGMv2_1559_10_20
Type: pfam
Location: 21221 - 21931 (-)
Type: pfam
Location: 21221 - 21931 (-)
Gene ID: HRGMv2_1559_10_21
Type: pfam
Location: 21928 - 23844 (-)
Type: pfam
Location: 21928 - 23844 (-)
Gene ID: HRGMv2_1559_10_22
Type: TC
Location: 23938 - 24705 (-)
Type: TC
Location: 23938 - 24705 (-)
Gene ID: HRGMv2_1559_10_23
Type: pfam
Location: 24834 - 26864 (-)
Type: pfam
Location: 24834 - 26864 (-)
Gene ID: HRGMv2_1559_10_24
Type: TC
Location: 27023 - 27817 (-)
Type: TC
Location: 27023 - 27817 (-)
Gene ID: HRGMv2_1559_10_25
Type: TC
Location: 27810 - 28733 (-)
Type: TC
Location: 27810 - 28733 (-)
Gene ID: HRGMv2_1559_10_26
Type: TC
Location: 28938 - 29918 (-)
Type: TC
Location: 28938 - 29918 (-)
Gene ID: HRGMv2_1559_10_27
Type:
Location: 30079 - 30864 (-)
Type:
Location: 30079 - 30864 (-)
Gene ID: HRGMv2_1559_10_28
Type: pfam
Location: 31114 - 32517 (-)
Type: pfam
Location: 31114 - 32517 (-)
Gene ID: HRGMv2_1559_10_29
Type: TC
Location: 32699 - 33262 (-)
Type: TC
Location: 32699 - 33262 (-)
Gene ID: HRGMv2_1559_10_30
Type: peptidase
Location: 33509 - 34408 (+)
Type: peptidase
Location: 33509 - 34408 (+)
Gene ID: HRGMv2_1559_10_31
Type:
Location: 34456 - 34776 (+)
Type:
Location: 34456 - 34776 (+)
Gene ID: HRGMv2_1559_10_32
Type: TC
Location: 34898 - 37258 (+)
Type: TC
Location: 34898 - 37258 (+)
Gene ID: HRGMv2_1559_10_33
Type: TC
Location: 37380 - 38576 (+)
Type: TC
Location: 37380 - 38576 (+)
Gene ID: HRGMv2_1559_10_34
Type: CAZyme
Location: 38730 - 40106 (+)
Type: CAZyme
Location: 38730 - 40106 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1559_10_23 | vegan > omnivore | 1.93557 | 0.01057 |
| HRGMv2_1559_10_23 | vegetarian > omnivore | 1.42573 | 0.01560 |