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Cluster: HRGMv2_1558_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1558_30 HRGMv2_1558_30_13 13158 13496 - 4.A.3.1.2
TF HRGMv2_1558_30 HRGMv2_1558_30_14 13711 14715 - LacI
TC HRGMv2_1558_30 HRGMv2_1558_30_15 15072 16847 + 4.A.3.1.1
CAZyme HRGMv2_1558_30 HRGMv2_1558_30_16 16914 18353 + GH1
TF HRGMv2_1558_30 HRGMv2_1558_30_17 18543 19544 - LacI
TC HRGMv2_1558_30 HRGMv2_1558_30_18 19829 21613 + 4.A.3.1.1
CAZyme HRGMv2_1558_30 HRGMv2_1558_30_19 21689 23110 + GH1
Gene ID: HRGMv2_1558_30_13
Type: TC
Location: 13158 - 13496 (-)
Gene ID: HRGMv2_1558_30_14
Type: TF
Location: 13711 - 14715 (-)
Gene ID: HRGMv2_1558_30_15
Type: TC
Location: 15072 - 16847 (+)
Gene ID: HRGMv2_1558_30_16
Type: CAZyme
Location: 16914 - 18353 (+)
Gene ID: HRGMv2_1558_30_17
Type: TF
Location: 18543 - 19544 (-)
Gene ID: HRGMv2_1558_30_18
Type: TC
Location: 19829 - 21613 (+)
Gene ID: HRGMv2_1558_30_19
Type: CAZyme
Location: 21689 - 23110 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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