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Cluster: HRGMv2_1555_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1555_21 HRGMv2_1555_21_18 21031 22413 - GH4
TC HRGMv2_1555_21 HRGMv2_1555_21_19 22417 24033 - 4.A.1.1.3
pfam HRGMv2_1555_21 HRGMv2_1555_21_20 24133 24987 - PRD | PRD | CAT_RBD
TC HRGMv2_1555_21 HRGMv2_1555_21_21 25006 25518 - 4.A.1.2.5
STP HRGMv2_1555_21 HRGMv2_1555_21_22 25798 26559 - Fer4
TC HRGMv2_1555_21 HRGMv2_1555_21_23 27178 29421 - 1.I.1.1.3
STP HRGMv2_1555_21 HRGMv2_1555_21_24 29921 30883 + FHA
STP HRGMv2_1555_21 HRGMv2_1555_21_25 31055 33139 + Pkinase
TC HRGMv2_1555_21 HRGMv2_1555_21_26 33632 35974 + 3.A.3.5.15
Gene ID: HRGMv2_1555_21_18
Type: CAZyme
Location: 21031 - 22413 (-)
Gene ID: HRGMv2_1555_21_19
Type: TC
Location: 22417 - 24033 (-)
Gene ID: HRGMv2_1555_21_20
Type: pfam
Location: 24133 - 24987 (-)
Gene ID: HRGMv2_1555_21_21
Type: TC
Location: 25006 - 25518 (-)
Gene ID: HRGMv2_1555_21_22
Type: STP
Location: 25798 - 26559 (-)
Gene ID: HRGMv2_1555_21_23
Type: TC
Location: 27178 - 29421 (-)
Gene ID: HRGMv2_1555_21_24
Type: STP
Location: 29921 - 30883 (+)
Gene ID: HRGMv2_1555_21_25
Type: STP
Location: 31055 - 33139 (+)
Gene ID: HRGMv2_1555_21_26
Type: TC
Location: 33632 - 35974 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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