Cluster: HRGMv2_1555_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1555
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1555_14 | HRGMv2_1555_14_5 | 4359 | 6965 | - | GH106 |
| TF | HRGMv2_1555_14 | HRGMv2_1555_14_6 | 7082 | 8089 | + | HTH_AraC |
| CAZyme | HRGMv2_1555_14 | HRGMv2_1555_14_7 | 8262 | 9710 | + | GH1 |
| TC | HRGMv2_1555_14 | HRGMv2_1555_14_8 | 9851 | 10387 | + | 4.A.1.2.6 |
Gene ID: HRGMv2_1555_14_5
Type: CAZyme
Location: 4359 - 6965 (-)
Type: CAZyme
Location: 4359 - 6965 (-)
Gene ID: HRGMv2_1555_14_6
Type: TF
Location: 7082 - 8089 (+)
Type: TF
Location: 7082 - 8089 (+)
Gene ID: HRGMv2_1555_14_7
Type: CAZyme
Location: 8262 - 9710 (+)
Type: CAZyme
Location: 8262 - 9710 (+)
Gene ID: HRGMv2_1555_14_8
Type: TC
Location: 9851 - 10387 (+)
Type: TC
Location: 9851 - 10387 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AH
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.