Cluster: HRGMv2_1555_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1555
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1555_12 | HRGMv2_1555_12_51 | 50932 | 52047 | - | GT28 |
| TC | HRGMv2_1555_12 | HRGMv2_1555_12_52 | 52037 | 53530 | - | 2.A.103.1.1 |
| pfam | HRGMv2_1555_12 | HRGMv2_1555_12_53 | 53567 | 54973 | - | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_1555_12 | HRGMv2_1555_12_54 | 54983 | 56002 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_1555_12_51
Type: CAZyme
Location: 50932 - 52047 (-)
Type: CAZyme
Location: 50932 - 52047 (-)
Gene ID: HRGMv2_1555_12_52
Type: TC
Location: 52037 - 53530 (-)
Type: TC
Location: 52037 - 53530 (-)
Gene ID: HRGMv2_1555_12_53
Type: pfam
Location: 53567 - 54973 (-)
Type: pfam
Location: 53567 - 54973 (-)
Gene ID: HRGMv2_1555_12_54
Type: TC
Location: 54983 - 56002 (-)
Type: TC
Location: 54983 - 56002 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AH
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.