Cluster: HRGMv2_1555_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1555
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1555_7 | HRGMv2_1555_7_16 | 23827 | 26835 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_1555_7 | HRGMv2_1555_7_17 | 26839 | 27294 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1555_7 | HRGMv2_1555_7_18 | 27448 | 28911 | + | 2.A.3.7.4 |
| STP | HRGMv2_1555_7 | HRGMv2_1555_7_19 | 29333 | 29581 | + | PTS-HPr |
| STP | HRGMv2_1555_7 | HRGMv2_1555_7_20 | 29770 | 30012 | + | FeoA |
| TC | HRGMv2_1555_7 | HRGMv2_1555_7_21 | 30053 | 30274 | + | 9.A.8.1.6 |
| TC | HRGMv2_1555_7 | HRGMv2_1555_7_22 | 30398 | 32725 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_1555_7_16
Type: CAZyme
Location: 23827 - 26835 (+)
Type: CAZyme
Location: 23827 - 26835 (+)
Gene ID: HRGMv2_1555_7_17
Type:
Location: 26839 - 27294 (+)
Type:
Location: 26839 - 27294 (+)
Gene ID: HRGMv2_1555_7_18
Type: TC
Location: 27448 - 28911 (+)
Type: TC
Location: 27448 - 28911 (+)
Gene ID: HRGMv2_1555_7_19
Type: STP
Location: 29333 - 29581 (+)
Type: STP
Location: 29333 - 29581 (+)
Gene ID: HRGMv2_1555_7_20
Type: STP
Location: 29770 - 30012 (+)
Type: STP
Location: 29770 - 30012 (+)
Gene ID: HRGMv2_1555_7_21
Type: TC
Location: 30053 - 30274 (+)
Type: TC
Location: 30053 - 30274 (+)
Gene ID: HRGMv2_1555_7_22
Type: TC
Location: 30398 - 32725 (+)
Type: TC
Location: 30398 - 32725 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AH
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.