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Cluster: HRGMv2_1555_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1555_6 HRGMv2_1555_6_50 48986 50362 - GH13_20
TC HRGMv2_1555_6 HRGMv2_1555_6_51 50516 51712 - 2.A.1.2.18
TC HRGMv2_1555_6 HRGMv2_1555_6_52 51834 54194 - 9.A.8.1.6
peptidase HRGMv2_1555_6 HRGMv2_1555_6_53 54683 55585 - S09.UPW
TC HRGMv2_1555_6 HRGMv2_1555_6_54 55830 56393 + 4.A.1.2.6
pfam HRGMv2_1555_6 HRGMv2_1555_6_55 56575 57978 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1555_6 HRGMv2_1555_6_56 58228 59013 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1555_6 HRGMv2_1555_6_57 59174 60154 + 3.A.1.34.1
TC HRGMv2_1555_6 HRGMv2_1555_6_58 60359 61282 + 3.A.1.34.1
TC HRGMv2_1555_6 HRGMv2_1555_6_59 61275 62069 + 3.A.1.34.1
pfam HRGMv2_1555_6 HRGMv2_1555_6_60 62228 64255 + Metallophos | 5_nucleotid_C
TC HRGMv2_1555_6 HRGMv2_1555_6_61 64384 65151 + 1.A.23.4.10
pfam HRGMv2_1555_6 HRGMv2_1555_6_62 65245 67161 + Bmp
pfam HRGMv2_1555_6 HRGMv2_1555_6_63 67158 67868 + Metallophos | Metallophos_2
TC HRGMv2_1555_6 HRGMv2_1555_6_64 67996 68703 - 1.C.82.1.1
Gene ID: HRGMv2_1555_6_50
Type: CAZyme
Location: 48986 - 50362 (-)
Gene ID: HRGMv2_1555_6_51
Type: TC
Location: 50516 - 51712 (-)
Gene ID: HRGMv2_1555_6_52
Type: TC
Location: 51834 - 54194 (-)
Gene ID: HRGMv2_1555_6_53
Type: peptidase
Location: 54683 - 55585 (-)
Gene ID: HRGMv2_1555_6_54
Type: TC
Location: 55830 - 56393 (+)
Gene ID: HRGMv2_1555_6_55
Type: pfam
Location: 56575 - 57978 (+)
Gene ID: HRGMv2_1555_6_56
Type:
Location: 58228 - 59013 (+)
Gene ID: HRGMv2_1555_6_57
Type: TC
Location: 59174 - 60154 (+)
Gene ID: HRGMv2_1555_6_58
Type: TC
Location: 60359 - 61282 (+)
Gene ID: HRGMv2_1555_6_59
Type: TC
Location: 61275 - 62069 (+)
Gene ID: HRGMv2_1555_6_60
Type: pfam
Location: 62228 - 64255 (+)
Gene ID: HRGMv2_1555_6_61
Type: TC
Location: 64384 - 65151 (+)
Gene ID: HRGMv2_1555_6_62
Type: pfam
Location: 65245 - 67161 (+)
Gene ID: HRGMv2_1555_6_63
Type: pfam
Location: 67158 - 67868 (+)
Gene ID: HRGMv2_1555_6_64
Type: TC
Location: 67996 - 68703 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1555_6_60 vegan > omnivore 1.81260 0.00566
HRGMv2_1555_6_60 vegetarian > omnivore 1.33152 0.01560

🧭 Explore Read Mapping of CGC

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