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Cluster: HRGMv2_1555_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1555_3 HRGMv2_1555_3_18 26566 27315 + 9.B.18.1.2
CAZyme HRGMv2_1555_3 HRGMv2_1555_3_19 27302 28108 + GT26
pfam HRGMv2_1555_3 HRGMv2_1555_3_20 28101 29210 + Epimerase_2
CAZyme HRGMv2_1555_3 HRGMv2_1555_3_21 29207 30316 + GT4
pfam HRGMv2_1555_3 HRGMv2_1555_3_22 30318 31193 + LicD
NULL(UNKNOWN) HRGMv2_1555_3 HRGMv2_1555_3_23 31177 31731 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1555_3 HRGMv2_1555_3_24 31747 32784 + GT2
pfam HRGMv2_1555_3 HRGMv2_1555_3_25 32800 33510 + Hexapep | Hexapep_2
CAZyme HRGMv2_1555_3 HRGMv2_1555_3_26 33513 34514 + GT2
Gene ID: HRGMv2_1555_3_18
Type: TC
Location: 26566 - 27315 (+)
Gene ID: HRGMv2_1555_3_19
Type: CAZyme
Location: 27302 - 28108 (+)
Gene ID: HRGMv2_1555_3_20
Type: pfam
Location: 28101 - 29210 (+)
Gene ID: HRGMv2_1555_3_21
Type: CAZyme
Location: 29207 - 30316 (+)
Gene ID: HRGMv2_1555_3_22
Type: pfam
Location: 30318 - 31193 (+)
Gene ID: HRGMv2_1555_3_23
Type:
Location: 31177 - 31731 (+)
Gene ID: HRGMv2_1555_3_24
Type: CAZyme
Location: 31747 - 32784 (+)
Gene ID: HRGMv2_1555_3_25
Type: pfam
Location: 32800 - 33510 (+)
Gene ID: HRGMv2_1555_3_26
Type: CAZyme
Location: 33513 - 34514 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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