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Cluster: HRGMv2_1555_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1555_1 HRGMv2_1555_1_60 61607 62089 + 4.A.6.1.5
sulfatase HRGMv2_1555_1 HRGMv2_1555_1_61 62415 63467 - S1_4
TF HRGMv2_1555_1 HRGMv2_1555_1_62 63672 64436 + HTH_DeoR
CAZyme HRGMv2_1555_1 HRGMv2_1555_1_63 64631 66052 - GH1
TC HRGMv2_1555_1 HRGMv2_1555_1_64 66131 67909 - 4.A.3.1.1
TF HRGMv2_1555_1 HRGMv2_1555_1_65 68185 69195 + LacI
TC HRGMv2_1555_1 HRGMv2_1555_1_66 69453 71213 - 4.A.3.1.1
CAZyme HRGMv2_1555_1 HRGMv2_1555_1_67 71390 72832 - GH1
TF HRGMv2_1555_1 HRGMv2_1555_1_68 73174 74211 + LacI
CAZyme HRGMv2_1555_1 HRGMv2_1555_1_69 74473 75912 - GH1
TC HRGMv2_1555_1 HRGMv2_1555_1_70 75979 77754 - 4.A.3.1.1
TF HRGMv2_1555_1 HRGMv2_1555_1_71 78111 79115 + LacI
TC HRGMv2_1555_1 HRGMv2_1555_1_72 79330 79668 + 4.A.3.1.2
Gene ID: HRGMv2_1555_1_60
Type: TC
Location: 61607 - 62089 (+)
Gene ID: HRGMv2_1555_1_61
Type: sulfatase
Location: 62415 - 63467 (-)
Gene ID: HRGMv2_1555_1_62
Type: TF
Location: 63672 - 64436 (+)
Gene ID: HRGMv2_1555_1_63
Type: CAZyme
Location: 64631 - 66052 (-)
Gene ID: HRGMv2_1555_1_64
Type: TC
Location: 66131 - 67909 (-)
Gene ID: HRGMv2_1555_1_65
Type: TF
Location: 68185 - 69195 (+)
Gene ID: HRGMv2_1555_1_66
Type: TC
Location: 69453 - 71213 (-)
Gene ID: HRGMv2_1555_1_67
Type: CAZyme
Location: 71390 - 72832 (-)
Gene ID: HRGMv2_1555_1_68
Type: TF
Location: 73174 - 74211 (+)
Gene ID: HRGMv2_1555_1_69
Type: CAZyme
Location: 74473 - 75912 (-)
Gene ID: HRGMv2_1555_1_70
Type: TC
Location: 75979 - 77754 (-)
Gene ID: HRGMv2_1555_1_71
Type: TF
Location: 78111 - 79115 (+)
Gene ID: HRGMv2_1555_1_72
Type: TC
Location: 79330 - 79668 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1555_1_68 vegetarian > omnivore 1.02744 0.01560

🧭 Explore Read Mapping of CGC

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