Cluster: HRGMv2_1555_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1555
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1555_46 | HRGMv2_1555_46_2 | 1117 | 2085 | - | GT2 |
| CAZyme | HRGMv2_1555_46 | HRGMv2_1555_46_3 | 2092 | 3063 | - | GT81 |
| TC | HRGMv2_1555_46 | HRGMv2_1555_46_4 | 3224 | 4069 | + | 3.A.1.103.6 |
| TC | HRGMv2_1555_46 | HRGMv2_1555_46_5 | 4081 | 4848 | + | 3.A.1.103.1 |
Gene ID: HRGMv2_1555_46_2
Type: CAZyme
Location: 1117 - 2085 (-)
Type: CAZyme
Location: 1117 - 2085 (-)
Gene ID: HRGMv2_1555_46_3
Type: CAZyme
Location: 2092 - 3063 (-)
Type: CAZyme
Location: 2092 - 3063 (-)
Gene ID: HRGMv2_1555_46_4
Type: TC
Location: 3224 - 4069 (+)
Type: TC
Location: 3224 - 4069 (+)
Gene ID: HRGMv2_1555_46_5
Type: TC
Location: 4081 - 4848 (+)
Type: TC
Location: 4081 - 4848 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AH
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.