Cluster: HRGMv2_1555_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1555
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1555_25 | HRGMv2_1555_25_13 | 13504 | 14910 | + | CE4 |
| STP | HRGMv2_1555_25 | HRGMv2_1555_25_14 | 15233 | 17077 | + | CBS | CBS |
| TC | HRGMv2_1555_25 | HRGMv2_1555_25_15 | 17086 | 18348 | + | 2.A.55.3.6 |
| TC | HRGMv2_1555_25 | HRGMv2_1555_25_16 | 18894 | 21104 | - | 9.B.97.5.1 |
Gene ID: HRGMv2_1555_25_13
Type: CAZyme
Location: 13504 - 14910 (+)
Type: CAZyme
Location: 13504 - 14910 (+)
Gene ID: HRGMv2_1555_25_14
Type: STP
Location: 15233 - 17077 (+)
Type: STP
Location: 15233 - 17077 (+)
Gene ID: HRGMv2_1555_25_15
Type: TC
Location: 17086 - 18348 (+)
Type: TC
Location: 17086 - 18348 (+)
Gene ID: HRGMv2_1555_25_16
Type: TC
Location: 18894 - 21104 (-)
Type: TC
Location: 18894 - 21104 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AH
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.