Cluster: HRGMv2_1555_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1555
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1555_23 | HRGMv2_1555_23_15 | 20259 | 21743 | + | GH1 |
| TF | HRGMv2_1555_23 | HRGMv2_1555_23_16 | 21874 | 23928 | + | Mga |
| CAZyme | HRGMv2_1555_23 | HRGMv2_1555_23_17 | 23998 | 25431 | - | GH1 |
| TC | HRGMv2_1555_23 | HRGMv2_1555_23_18 | 25563 | 27269 | - | 4.A.3.2.2 |
Gene ID: HRGMv2_1555_23_15
Type: CAZyme
Location: 20259 - 21743 (+)
Type: CAZyme
Location: 20259 - 21743 (+)
Gene ID: HRGMv2_1555_23_16
Type: TF
Location: 21874 - 23928 (+)
Type: TF
Location: 21874 - 23928 (+)
Gene ID: HRGMv2_1555_23_17
Type: CAZyme
Location: 23998 - 25431 (-)
Type: CAZyme
Location: 23998 - 25431 (-)
Gene ID: HRGMv2_1555_23_18
Type: TC
Location: 25563 - 27269 (-)
Type: TC
Location: 25563 - 27269 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AH
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.