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Cluster: HRGMv2_1555_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1555_1 HRGMv2_1555_1_48 51102 51545 + 4.A.6.1.16
pfam HRGMv2_1555_1 HRGMv2_1555_1_49 51545 51826 + YajC
TC HRGMv2_1555_1 HRGMv2_1555_1_50 51863 52345 + 4.A.6.1.4
TC HRGMv2_1555_1 HRGMv2_1555_1_51 52436 53236 + 4.A.6.1.4
TC HRGMv2_1555_1 HRGMv2_1555_1_52 53226 54308 + 4.A.6.1.4
TF HRGMv2_1555_1 HRGMv2_1555_1_53 54493 55224 + GntR
STP HRGMv2_1555_1 HRGMv2_1555_1_54 55339 56505 + SIS | SIS
CAZyme HRGMv2_1555_1 HRGMv2_1555_1_55 56624 57793 + CE9
Gene ID: HRGMv2_1555_1_48
Type: TC
Location: 51102 - 51545 (+)
Gene ID: HRGMv2_1555_1_49
Type: pfam
Location: 51545 - 51826 (+)
Gene ID: HRGMv2_1555_1_50
Type: TC
Location: 51863 - 52345 (+)
Gene ID: HRGMv2_1555_1_51
Type: TC
Location: 52436 - 53236 (+)
Gene ID: HRGMv2_1555_1_52
Type: TC
Location: 53226 - 54308 (+)
Gene ID: HRGMv2_1555_1_53
Type: TF
Location: 54493 - 55224 (+)
Gene ID: HRGMv2_1555_1_54
Type: STP
Location: 55339 - 56505 (+)
Gene ID: HRGMv2_1555_1_55
Type: CAZyme
Location: 56624 - 57793 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1555_1_49 vegan > omnivore 1.12102 0.00566

🧭 Explore Read Mapping of CGC

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